PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g096860.1.1
Common NameLOC101251231
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 444aa    MW: 50617.1 Da    PI: 4.916
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g096860.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.1e-1572130255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GV++++++gr++A+++d  ++n    k+ ++++lg ++++e Aa+ ++ a++k++g
  Solyc01g096860.1.1  72 IFRGVTRHRWTGRYEAHLWDkSTWNSiqkKKgRQIYLGAYDSEEAAARTYDLAALKYWG 130
                         69******************666699986448*************************98 PP

2AP252.61.1e-16173224155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I  ++    +k+ +lg++ t eeAa+a++ a+ +++g
  Solyc01g096860.1.1 173 SKYRGVARHHHNGRWEARIGRVYG---NKYLYLGTYSTQEEAAAAYDMAAIEYRG 224
                         89****99***********99654...4*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576118No hitNo description
CDDcd000187.09E-2171139No hitNo description
SuperFamilySSF541712.81E-1671140IPR016177DNA-binding domain
SMARTSM003801.6E-2672144IPR001471AP2/ERF domain
PROSITE profilePS5103219.78372138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1472139IPR001471AP2/ERF domain
PfamPF008478.1E-1272130IPR001471AP2/ERF domain
PRINTSPR003678.6E-67384IPR001471AP2/ERF domain
PfamPF008471.6E-11173224IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-18173234IPR016177DNA-binding domain
CDDcd000186.71E-16173234No hitNo description
SMARTSM003808.4E-27174238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18174232IPR001471AP2/ERF domain
PROSITE profilePS5103218.452174232IPR001471AP2/ERF domain
PRINTSPR003678.6E-6214234IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MKKSPSFSCS SSSSSSSCIE QIHEETEKLN LKPKPKPKPK PKPRLKRASR AKKIVNADSP  60
SNNSSTARRS SIFRGVTRHR WTGRYEAHLW DKSTWNSIQK KKGRQIYLGA YDSEEAAART  120
YDLAALKYWG PTTLLNFPVE RYSKEFEEMQ RLTKEEYLAS LRRMSSGFSR GVSKYRGVAR  180
HHHNGRWEAR IGRVYGNKYL YLGTYSTQEE AAAAYDMAAI EYRGPNAVTN FDISRYADHL  240
KKLREPDLLT KEENTESSAE VQSSEVIEQY QPVQQEESQF DYQLAELAAE PIVVPKLEFT  300
PALDFDEVTQ PKVLKLEFAA DLINAKDHEE EEDYPWMNMY LDDTFDSLPV SDFSLDKPTD  360
LMDLFNDNSF DNNIDFDFYE QSSENEFNLN VFSDSMIIDG IEADNEEVRN NLSISPTSSS  420
SMSRTTSISN DMKDDGGLAS STM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231231.10.0PREDICTED: ethylene-responsive transcription factor WRI1
SwissprotQ6X5Y61e-111WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLK4B0740.0K4B074_SOLLC; Uncharacterized protein
STRINGSolyc01g096860.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91342227
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-105AP2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]